Details for Phenotype: Seed curved shape index (ID: 76)

Phenotype ID:
76
Name:
Seed curved shape index
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Curved Height to the width of the seed at mid-curved-height, as measured perpendicular to the curved height line
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10801.8484United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10841.83065United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10851.856925United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10861.9377625United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10891.8251625United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10901.982475United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10912.07195United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10921.7412375United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10931.7995875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10941.8602625United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10952.1980375United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10962.198675United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10972.0016875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10981.8617625United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11011.942325United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11031.5767875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11041.796875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11052.3817625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11061.8579875United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11072.0488625United StatesUtah40.1781-111.65071
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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