Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10152.0612875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10162.1044125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10171.68574United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10181.6205125United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10191.9923625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10201.84405United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10211.94595United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10221.7672United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10231.79425United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10242.056175United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10251.954575United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10262.067925United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10291.8276875United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10302.0168125United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10312.3095United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10322.1849375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10331.8532United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10341.8887United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10351.7087875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10362.2739375United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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