Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10371.8940625United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10381.94465United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10392.0676875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10402.1004United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10451.9227United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10461.8451125United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10511.7756375United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10611.78055United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10622.0815875United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10681.62605United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10691.84125United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10701.761525United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10711.6263125United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10721.749425United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10731.852375United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10751.804975United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10762.0323625United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10771.8395875United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10781.843075United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10791.7316125United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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