Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09862.109625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09871.877625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09881.8044875United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09911.618483333United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09922.17385United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09961.843375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09971.823825United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09982.052275United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09991.7189875United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10002.103575United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10011.7154United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10021.9271875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10031.817United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10071.815875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10081.9660375United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10092.2214875United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10111.9643875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10122.0596625United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10132.2339United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10142.0323125United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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