Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09292.2918875United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09311.885675United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09321.7090125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09331.839125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09341.9250625United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09391.903125United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09401.9400625United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09432.2634United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09441.8062625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09471.614United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09481.9305625United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09491.7305United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09501.5599United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09511.73015United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09521.9178United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09531.97695United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09542.09935United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09552.3491625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09562.241525United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09571.8669United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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