Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08931.9827375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08941.5318875United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08971.887United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08982.0413125United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09011.5456875United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09022.4210625United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09031.88515United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09071.820183333United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09082.00126United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09111.9488375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09121.84735United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09131.967775United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09141.8388375United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09191.935225United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09202.19665United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09211.8431875United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09221.7402United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09231.808625United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09241.85122United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09271.9447United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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