Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08702.032825United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08711.8392875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08731.7475375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08741.8409375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08762.125125United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08771.8985United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08782.1638375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08792.2948875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08801.7633625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08811.806475United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08822.1876United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08832.0221United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08841.9079125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08851.98655United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08861.8081125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08871.8287875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08881.9010875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08892.099275United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08911.834375United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08922.1620625United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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