Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08481.9020625United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08511.9306United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08521.8335875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08532.2533625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08542.0530875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08552.0192375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08561.9057375United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08571.8097625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08581.815025United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08591.747775United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08601.995175United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08611.860375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08621.958085714United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08632.0051125United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08642.1970375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08652.014575United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08662.184466667United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08672.07365United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08681.818175United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08691.9048125United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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