Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13851.8654125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13861.745675United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13872.01795United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13881.8148375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13891.885075United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13901.8444United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13911.6874125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13921.744375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13931.8220125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13941.776425United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13951.954875United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13961.8849125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13971.8313125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13981.530725United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13991.6993375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14001.8704125United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14011.6051625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14021.7235125United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14031.8327125United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14041.5778375United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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