Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13652.107975United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13661.8645375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13671.8911875United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13682.0042125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13692.249575United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13701.801775United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13711.54315United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13721.6669125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13731.9539375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13741.9670375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13752.2131625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13761.9235125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13771.9873125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13781.5714625United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13791.5835125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13801.8500375United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13811.888375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13821.853525United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13831.9670375United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13841.7097125United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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