Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13411.9202875United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13421.6353625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13431.448675United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13441.573525United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13451.581United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13461.832525United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13471.742375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13481.938025United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13501.8135875United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13511.6616875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13521.5725125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13531.759625United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13541.7901375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13551.9181875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13561.907875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13592.1233375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13601.7251875United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13611.6476125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13632.09885United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13642.244825United StatesTexas27.63854-97.24526
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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