Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12392.046414286United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12401.947175United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12411.960525United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12422.1464625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12432.1010125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12442.1566125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12472.1050375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12481.8931375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12492.0910375United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12502.2721375United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12511.869033333United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12521.65775United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12531.9916625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12541.8641625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12552.0441875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12562.1159125United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12571.680425United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12581.7493875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12591.821725United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12601.5828375United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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