Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12151.881275United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12171.64625United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12181.6503125United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12191.5387United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12201.704871429United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12211.7814625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12221.7221625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12231.7014375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12241.684125United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12261.854575United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12271.9204625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12282.0878375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12291.7824875United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12301.6083875United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12321.818625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12332.0916375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12351.87655United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12361.9958United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12371.7782125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12382.1896125United StatesTexas29.05186-99.01808
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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