Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12631.8938375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12642.059275United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12651.68235United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12661.8627875United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12671.6520375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12681.6901375United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12691.91445United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12701.847075United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12911.990975United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12922.0195875United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12941.8196125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13001.9003125United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13022.1704125United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13111.9098United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13141.9355375United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13152.1901125United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13161.677725United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13171.9307United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13181.825United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13191.7221625United StatesTexas31.13312-104.02012
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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