Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11681.7600375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11692.0532375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11701.9198625United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11711.6785United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11721.8195375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11751.83995United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11761.922325United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11781.8928625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11791.8090875United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11801.9019375United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11911.799875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11921.77405United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11941.86495United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11962.022425United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11971.877875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11981.965United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12111.87025United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12121.778425United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12131.67475United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12141.7578United StatesTexas32.92224-97.36547
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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