Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10801.8146375United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10841.8247125United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10851.8285125United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10861.92465United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10891.79875United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10901.926175United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10911.97885United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10921.653775United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10931.757625United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10941.805475United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10952.1307United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10962.1279125United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10971.9526875United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10981.8002375United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11011.889025United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11031.53985United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11041.730075United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11052.321075United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11061.8153625United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11072.0127375United StatesUtah40.1781-111.65071
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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