Details for Phenotype: Seed shape index external II (ID: 75)

Phenotype ID:
75
Name:
Seed shape index external II
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of Height Midwidth to Width Mid-height
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11091.960075United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11102.042625United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11151.9129125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11162.0079375United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11171.6327United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11181.8950875United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11191.7951125United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11201.781875United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11231.6910125United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11241.7161United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11291.7048375United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11301.71205United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11331.8319625United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11351.7599375United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11361.7118875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11371.709875United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11381.757775United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11431.7418875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11441.883375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11451.644625United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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