Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09862.062325United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09871.7595United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09881.7502375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09911.5651United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09922.072125United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09961.79465United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09971.76865United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09981.9404375United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09991.681725United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10002.0163375United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10011.66915United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10021.851975United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10031.806175United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10071.7887625United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10081.8783875United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10092.116225United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10111.9172875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10121.994225United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10132.17845United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10141.977475United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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