Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09582.614975United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09592.1068875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09602.2006United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09611.7199625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09621.559225United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09671.916375United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09681.7383875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09691.76785United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09701.6698United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09722.0071625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09751.751525United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09761.8016875United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09771.8514United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09781.880075United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09801.8359625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09811.71535United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09822.0064125United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09831.915225United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09841.8955375United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09852.0191125United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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