Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10151.935975United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10162.0184United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10171.64362United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10181.58575United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10191.9576875United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10201.7728United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10211.8755625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10221.7313125United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10231.7193United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10241.9752875United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10251.858175United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10262.0080625United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10291.7672375United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10301.9246625United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10312.210575United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10322.1002125United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10331.77875United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10341.8417375United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10351.678675United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10362.2002875United StatesNevada39.48892-119.99511
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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