Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09292.201225United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09311.850725United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09321.6636625United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09331.7805United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09341.8120375United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09391.8327625United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09401.882625United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09432.130475United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09441.7562375United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09471.5861125United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09481.8650875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09491.6465875United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09501.5246375United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09511.681325United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09521.8245875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09531.9045875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09542.0323375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09552.2730625United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09562.1389375United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09571.7950625United StatesNew Mexico35.40041-108.23557
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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