Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_59ANN13851.8056125United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13861.7291875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13871.961825United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13881.7382875United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13891.820175United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13901.785725United StatesTexas26.50251-97.77181
Helianthus annuusANN_60ANN13911.624075United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13921.688425United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13931.7492United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13941.7334375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13951.8537United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13961.8189375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13971.7808125United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13981.476375United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN13991.64785United StatesTexas27.28522-97.66729
Helianthus annuusANN_60ANN14001.80135United StatesTexas27.28522-97.66729
Helianthus annuusANN_61ANN14011.57435United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14021.6813625United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14031.732925United StatesTexas27.77652-97.66801
Helianthus annuusANN_61ANN14041.5173625United StatesTexas27.77652-97.66801
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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