Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_57ANN13651.98625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13661.8010625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13671.8213375United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13681.928725United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13692.1421125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13701.689075United StatesTexas27.63854-97.24526
Helianthus annuusANN_58ANN13711.476875United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13721.601United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13731.901925United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13741.8938125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13752.1418United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13761.8647125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13771.89755United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13781.5176375United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13791.5347125United StatesTexas28.24166-97.67443
Helianthus annuusANN_58ANN13801.7900125United StatesTexas28.24166-97.67443
Helianthus annuusANN_59ANN13811.817675United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13821.8219United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13831.8580625United StatesTexas26.50251-97.77181
Helianthus annuusANN_59ANN13841.6600375United StatesTexas26.50251-97.77181
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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