Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13411.8408625United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13421.579825United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13431.4021375United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13441.5214125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13451.5538United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13461.7361125United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13471.665425United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13481.895025United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13501.758225United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13511.6102375United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13521.5211875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13531.66145United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13541.720825United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13551.8567125United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13561.8209875United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13592.04275United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13601.6537625United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13611.5964125United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13632.0053625United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13642.1292625United StatesTexas27.63854-97.24526
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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