Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13201.8379875United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13211.95728United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13221.9659875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13231.8891375United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13242.1645625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13251.85365United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13261.9138125United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13271.91845United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13281.7606875United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13292.0026625United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13301.7858625United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13311.7943375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13321.8179375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13331.6503375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13341.6407125United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13351.7674United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13361.522025United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13381.5758375United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13391.895825United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13401.6961125United StatesTexas29.11355-97.39837
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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