Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12151.8038875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12171.6016875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12181.59205United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12191.4961875United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12201.6751United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12211.726275United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12221.6889625United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12231.6607125United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12241.63795United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12261.80235United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12271.8687375United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12282.0321United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12291.7458United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12301.595975United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12321.7668United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12332.02865United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12351.839125United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12361.8663625United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12371.7716375United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12382.09405United StatesTexas29.05186-99.01808
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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