Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11681.7028125United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11691.9844375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11701.8847875United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11711.643825United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11721.7737375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11751.7998625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11761.8437375United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11781.862625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11791.768625United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11801.8641875United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11911.7611375United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11921.72985United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11941.8190875United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11961.933United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11971.8400125United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11981.9079375United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12111.809275United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12121.7605375United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12131.62155United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12141.7077United StatesTexas32.92224-97.36547
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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