Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12391.963814286United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12401.851225United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12411.866725United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12422.02125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12432.02005United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12442.057175United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12472.0283625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12481.8427625United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12491.9933125United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12502.158325United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12511.830166667United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12521.59535United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12531.8789625United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12541.7874375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12551.959425United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12562.0354375United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12571.61255United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12581.668275United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12591.7507875United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12601.5127125United StatesCalifornia33.92321-116.86432
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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