Details for Phenotype: Seed shape index external I (ID: 74)

Phenotype ID:
74
Name:
Seed shape index external I
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
No unit available
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
The ratio of the Maximum Height to Maximum Width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11461.713975United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11471.6956United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11481.9793875United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11491.9561375United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11501.8267625United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11511.5877625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11521.926975United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11531.8898125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11541.9450375United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11551.7394625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11561.95185United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11571.90745United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11581.8628625United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11591.6682125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11601.8443125United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11632.0154375United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11641.7976625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11651.7323625United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11661.880425United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11671.9851125United StatesColorado40.48679-105.09619
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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