Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_22ANN10151.963345437United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10162.044249749United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10171.678555092United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10181.633117154United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10191.990525764United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10201.797692238United StatesColorado39.00672-108.46384
Helianthus annuusANN_23ANN10211.916321022United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10221.775171012United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10231.750640173United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10242.017712396United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10251.888599078United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10262.039568182United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10291.807102557United StatesNevada40.66257-116.23876
Helianthus annuusANN_23ANN10301.966150229United StatesNevada40.66257-116.23876
Helianthus annuusANN_24ANN10312.23897374United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10322.122335285United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10331.809798069United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10341.871480874United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10351.717895807United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10362.221506783United StatesNevada39.48892-119.99511
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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