Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_19ANN09862.068591793United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09871.802918577United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09881.796536952United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_20ANN09911.611503147United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09922.127705699United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09961.85614245United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09971.820313363United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09981.975775646United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN09991.715980172United StatesColorado38.44366-107.62928
Helianthus annuusANN_20ANN10002.073603464United StatesColorado38.44366-107.62928
Helianthus annuusANN_21ANN10011.710954284United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10021.883456351United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10031.839927884United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10071.846394397United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10081.912372482United StatesColorado38.91004-108.3738
Helianthus annuusANN_21ANN10092.15095957United StatesColorado38.91004-108.3738
Helianthus annuusANN_22ANN10111.908162398United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10122.025936291United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10132.213905843United StatesColorado39.00672-108.46384
Helianthus annuusANN_22ANN10142.007753111United StatesColorado39.00672-108.46384
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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