Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_24ANN10371.897132871United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10381.860639455United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10392.027837045United StatesNevada39.48892-119.99511
Helianthus annuusANN_24ANN10402.062169569United StatesNevada39.48892-119.99511
Helianthus annuusANN_25ANN10451.946227673United StatesNevada36.79654-114.09841
Helianthus annuusANN_25ANN10461.801330187United StatesNevada36.79654-114.09841
Helianthus annuusANN_26ANN10511.810583762United StatesUtah37.13733-113.51348
Helianthus annuusANN_27ANN10611.800342979United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10621.996789121United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10681.636140892United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10691.835364611United StatesUtah37.13137-112.56561
Helianthus annuusANN_27ANN10701.744360933United StatesUtah37.13137-112.56561
Helianthus annuusANN_28ANN10711.619346153United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10721.706396982United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10731.795537445United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10751.76637008United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10761.995101141United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10771.782482465United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10781.784810756United StatesUtah38.21652-112.64767
Helianthus annuusANN_28ANN10791.700928425United StatesUtah38.21652-112.64767
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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