Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09582.638195231United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09592.144214855United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09602.235492686United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09611.760298278United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09621.584297773United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09671.950428043United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09681.765787096United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09691.818186125United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09701.721895166United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09722.040844853United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09751.79517197United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09761.841271642United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09771.890166883United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09781.933371648United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09801.873064663United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09811.760730553United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09822.059664433United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09831.965449383United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09841.945491967United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09852.04192753United StatesNew Mexico36.7268-104.01913
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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