Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_13ANN09292.23562641United StatesArizona34.75056-112.01697
Helianthus annuusANN_14ANN09311.89960911United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09321.722187876United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09331.823525349United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09341.856394571United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09391.894956225United StatesArizona36.1086-111.24184
Helianthus annuusANN_14ANN09401.936280593United StatesArizona36.1086-111.24184
Helianthus annuusANN_15ANN09432.157237583United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09441.792045464United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09471.617595984United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09481.88225562United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09491.675825707United StatesArizona35.03852-110.7351
Helianthus annuusANN_15ANN09501.573533473United StatesArizona35.03852-110.7351
Helianthus annuusANN_16ANN09511.731382263United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09521.854798088United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09531.950936799United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09542.101574446United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09552.317146147United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09562.183214198United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09571.846699932United StatesNew Mexico35.40041-108.23557
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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