Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_10ANN08931.985898316United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08941.533833677United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08971.889856873United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08982.002222665United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_11ANN09011.564282162United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09022.379852621United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09031.925241898United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09071.754865171United StatesArizona35.19566-114.06666
Helianthus annuusANN_11ANN09082.027254124United StatesArizona35.19566-114.06666
Helianthus annuusANN_12ANN09111.925268821United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09121.847129443United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09131.959432578United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09141.809668205United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09191.853077712United StatesArizona35.2533-112.13355
Helianthus annuusANN_12ANN09202.153490294United StatesArizona35.2533-112.13355
Helianthus annuusANN_13ANN09211.825755452United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09221.743753741United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09231.798861154United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09241.808129402United StatesArizona34.75056-112.01697
Helianthus annuusANN_13ANN09271.935252809United StatesArizona34.75056-112.01697
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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