Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08701.955191408United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08711.807074732United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08731.724657483United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08741.829705788United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08762.081950408United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08771.84661614United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08782.11838222United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08792.253308465United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08801.735554595United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08811.797038117United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08822.188883932United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08831.979828049United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08841.891405742United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08851.94938532United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08861.797247011United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08871.825771387United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08881.865496762United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08892.07580524United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08911.821632731United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08922.22387442United StatesCalifornia37.17346-118.27904
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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