Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08481.846210472United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08511.883176663United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08521.861869923United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08532.136818869United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08542.005125961United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08551.985792849United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08561.866750784United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08571.788978805United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08581.779373814United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08591.701186768United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08601.935526853United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08611.869789984United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08621.943377098United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08631.974168918United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08642.127955843United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08651.974913401United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08662.148229336United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08672.047628639United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08681.767141985United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08691.860356252United StatesCalifornia38.7892-119.9363
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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