Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_03ANN08251.684874306United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08261.876226153United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08271.696410296United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_03ANN08281.732502688United StatesCalifornia36.24542-120.31654
Helianthus annuusANN_04ANN08312.266807498United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08321.902925406United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08331.825126873United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08341.628508727United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08352.189691272United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08362.060370468United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08371.836670977United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08391.836755979United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_04ANN08401.789970499United StatesCalifornia34.75087-119.07235
Helianthus annuusANN_05ANN08412.028629212United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08421.614842121United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08431.881586078United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08441.907880229United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08451.946069114United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08461.629430574United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_05ANN08471.697959575United StatesCalifornia33.69278-116.18411
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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