Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_55ANN13411.894668257United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13421.658798421United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13431.461154196United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13441.597855056United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13451.599652557United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13461.789087715United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13471.713212636United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13481.962238292United StatesTexas28.66061-96.58348
Helianthus annuusANN_55ANN13501.817201653United StatesTexas28.66061-96.58348
Helianthus annuusANN_56ANN13511.677142591United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13521.594694561United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13531.708737906United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13541.761651927United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13551.912300442United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13561.886374658United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13592.111100745United StatesTexas28.08852-97.06011
Helianthus annuusANN_56ANN13601.717918107United StatesTexas28.08852-97.06011
Helianthus annuusANN_57ANN13611.671995291United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13632.043408424United StatesTexas27.63854-97.24526
Helianthus annuusANN_57ANN13642.168223279United StatesTexas27.63854-97.24526
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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