Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_52ANN13201.879303051United StatesTexas31.13312-104.02012
Helianthus annuusANN_53ANN13212.010296755United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13221.994538393United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13231.945094221United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13242.195381671United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13251.902190716United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13261.95995266United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13271.949308418United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13281.811239924United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13292.056226691United StatesTexas31.03955-103.13683
Helianthus annuusANN_53ANN13301.846948297United StatesTexas31.03955-103.13683
Helianthus annuusANN_54ANN13311.865865363United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13321.881646664United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13331.705081372United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13341.686930628United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13351.801127578United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13361.557628861United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13381.637923409United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13391.957172484United StatesTexas29.11355-97.39837
Helianthus annuusANN_54ANN13401.756375918United StatesTexas29.11355-97.39837
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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dominik.grimm [at] hswt.de

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