Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_47ANN12631.817343866United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12641.972391002United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12651.661080449United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12661.819622368United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12671.644183442United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12681.66559287United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12691.888110903United StatesArizona32.73158-111.53769
Helianthus annuusANN_47ANN12701.832719826United StatesArizona32.73158-111.53769
Helianthus annuusANN_50ANN12911.927787659United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12921.976207429United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN12941.796605498United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_50ANN13001.862279706United StatesNew Mexico32.17943-108.38541
Helianthus annuusANN_51ANN13022.079245673United StatesNew Mexico32.12876-106.67373
Helianthus annuusANN_52ANN13111.906517209United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13141.916500251United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13152.134516676United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13161.664613748United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13171.940758881United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13181.81125882United StatesTexas31.13312-104.02012
Helianthus annuusANN_52ANN13191.708801713United StatesTexas31.13312-104.02012
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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