Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_44ANN12392.016775104United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12401.900295039United StatesTexas29.05186-99.01808
Helianthus annuusANN_45ANN12411.933699909United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12422.07637588United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12432.068927942United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12442.111261092United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12472.092964626United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12481.898066859United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12492.039891254United StatesTexas28.63085-100.1189
Helianthus annuusANN_45ANN12502.207577923United StatesTexas28.63085-100.1189
Helianthus annuusANN_46ANN12511.861376795United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12521.623494346United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12531.907046712United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12541.815057296United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12551.98872833United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12562.065389057United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12571.645793323United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12581.700879073United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12591.793482798United StatesCalifornia33.92321-116.86432
Helianthus annuusANN_46ANN12601.552112731United StatesCalifornia33.92321-116.86432
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
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dominik.grimm [at] hswt.de

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