Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_42ANN12151.837751914United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12171.655537201United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12181.656785087United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12191.559604866United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12201.711848631United StatesTexas32.92224-97.36547
Helianthus annuusANN_43ANN12211.756156752United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12221.730068574United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12231.699037419United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12241.689844816United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12261.833426129United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12271.913506156United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12282.051741759United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12291.794650883United StatesTexas29.73315-97.65574
Helianthus annuusANN_43ANN12301.622565722United StatesTexas29.73315-97.65574
Helianthus annuusANN_44ANN12321.79956333United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12332.069157187United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12351.886852276United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12361.924285117United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12371.849280097United StatesTexas29.05186-99.01808
Helianthus annuusANN_44ANN12382.142748427United StatesTexas29.05186-99.01808
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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