Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_37ANN11681.742284796United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11692.012532475United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11701.910972472United StatesColorado40.48679-105.09619
Helianthus annuusANN_38ANN11711.67575073United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11721.790133299United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11751.841946388United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11761.887453695United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11781.896580456United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11791.831287394United StatesKansas38.44118-98.63231
Helianthus annuusANN_38ANN11801.910881358United StatesKansas38.44118-98.63231
Helianthus annuusANN_40ANN11911.783841482United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11921.759168221United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11941.856299347United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11961.963856991United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11971.864584601United StatesKansas37.23327-98.66459
Helianthus annuusANN_40ANN11981.935879767United StatesKansas37.23327-98.66459
Helianthus annuusANN_42ANN12111.843087445United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12121.786813789United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12131.66384768United StatesTexas32.92224-97.36547
Helianthus annuusANN_42ANN12141.75950069United StatesTexas32.92224-97.36547
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
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93415 Straubing
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dominik.grimm [at] hswt.de

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