Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_35ANN11461.740535459United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11471.739439994United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11481.997017513United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11491.983519954United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11501.83578479United StatesUtah40.51274-109.51947
Helianthus annuusANN_36ANN11511.614769515United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11521.95060294United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11531.919921829United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11541.978267228United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11551.775083039United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11561.997075845United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11571.942810614United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11581.940218114United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11591.708449355United StatesWyoming41.77426-107.45885
Helianthus annuusANN_36ANN11601.888857603United StatesWyoming41.77426-107.45885
Helianthus annuusANN_37ANN11632.059571668United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11641.841934187United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11651.766293578United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11661.931382703United StatesColorado40.48679-105.09619
Helianthus annuusANN_37ANN11672.050476319United StatesColorado40.48679-105.09619
Publications
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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