Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_31ANN11091.909497129United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11102.001893411United StatesUtah40.1781-111.65071
Helianthus annuusANN_32ANN11151.912729653United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11161.941448674United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11171.61423143United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11181.836166938United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11191.787887349United StatesUtah41.48524-112.0556
Helianthus annuusANN_32ANN11201.750230158United StatesUtah41.48524-112.0556
Helianthus annuusANN_33ANN11231.666972012United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11241.706120189United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11291.675736373United StatesUtah40.77115-112.15004
Helianthus annuusANN_33ANN11301.697560172United StatesUtah40.77115-112.15004
Helianthus annuusANN_34ANN11331.766638117United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11351.716479725United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11361.731807605United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11371.691730067United StatesUtah40.69149-112.26423
Helianthus annuusANN_34ANN11381.785012195United StatesUtah40.69149-112.26423
Helianthus annuusANN_35ANN11431.66307232United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11441.813369709United StatesUtah40.51274-109.51947
Helianthus annuusANN_35ANN11451.58757517United StatesUtah40.51274-109.51947
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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