Details for Phenotype: Seed HW ratio (ID: 73)

Phenotype ID:
73
Name:
Seed HW ratio
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed shape
Type:
Quantitative
Ontology:
seed shape
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Ratio between curved length and maximum seed width
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_28ANN10801.793897458United StatesUtah38.21652-112.64767
Helianthus annuusANN_29ANN10841.813406358United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10851.836210198United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10861.886242796United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10891.760034695United StatesUtah39.55006-112.35661
Helianthus annuusANN_29ANN10901.877148985United StatesUtah39.55006-112.35661
Helianthus annuusANN_30ANN10912.016376392United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10921.67557158United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10931.756978179United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10941.776224166United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10952.096541808United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10962.11400275United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10971.909544856United StatesUtah39.7148-112.20662
Helianthus annuusANN_30ANN10981.778581358United StatesUtah39.7148-112.20662
Helianthus annuusANN_31ANN11011.839412096United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11031.522098983United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11041.742791965United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11052.261208926United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11061.805262811United StatesUtah40.1781-111.65071
Helianthus annuusANN_31ANN11071.97022864United StatesUtah40.1781-111.65071
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Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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