Details for Phenotype: Seed curved height (ID: 72)

Phenotype ID:
72
Name:
Seed curved height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured along a curved line through the seed (equidistant from both seed borders)
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_16ANN09585.619125United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09595.3441875United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_16ANN09605.5628United StatesNew Mexico35.40041-108.23557
Helianthus annuusANN_17ANN09615.258275United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09625.248125United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09675.6559United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09685.0807875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09695.2772625United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_17ANN09704.9430875United StatesNew Mexico35.24503-107.68594
Helianthus annuusANN_18ANN09725.62115United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09754.8495United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09765.0714375United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09775.293625United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09784.96195United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_18ANN09805.7661125United StatesNew Mexico36.07308-104.28873
Helianthus annuusANN_19ANN09815.001025United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09824.956325United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09834.906425United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09844.6198625United StatesNew Mexico36.7268-104.01913
Helianthus annuusANN_19ANN09855.299925United StatesNew Mexico36.7268-104.01913
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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