Details for Phenotype: Seed curved height (ID: 72)

Phenotype ID:
72
Name:
Seed curved height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured along a curved line through the seed (equidistant from both seed borders)
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_07ANN08705.8300875United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_08ANN08715.605975United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08735.2225United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08745.1920875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08766.194375United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08775.5308United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08785.6973625United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08796.1764875United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_08ANN08805.418575United StatesCalifornia38.67722-119.73895
Helianthus annuusANN_09ANN08814.4669875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08824.4767875United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08834.6804125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08843.9234375United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08854.77095United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08863.851725United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08874.6568125United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08884.770425United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_09ANN08894.59425United StatesCalifornia37.43321-118.40646
Helianthus annuusANN_10ANN08914.154575United StatesCalifornia37.17346-118.27904
Helianthus annuusANN_10ANN08924.7689875United StatesCalifornia37.17346-118.27904
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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