Details for Phenotype: Seed curved height (ID: 72)

Phenotype ID:
72
Name:
Seed curved height
Species:
Helianthus annuus
Species NCBI-ID:
4232
Category:
Seed traits
Sub-Category:
Seed size
Type:
Quantitative
Ontology:
seed length
Unit:
cm
#Samples:
426
#Populations:
58
GWAS Results in easyGWAS
easyGWAS results
Phenotype Description
Length measured along a curved line through the seed (equidistant from both seed borders)
Phenotype Scoring
At least three inflorescences for each plant were bagged before anthesis and manually crossed to another individual from the same population of origin. Seeds were let to dry on the plant, collected, cleaned and store in an hermetically sealed box containing silica gel. Eigth seeds from each plant were imaged using a high resolution scanner, at a resolution of 2400 dpi. A size and colour standard was included in each picture. Images were analyed using Tomato Analyzer (Rodrigues. et al. 2010); object boundaries in Tomato Analyzer were manually adjusted to exclude seed hair.

Population Map (58 Populations with 426 Individuals)

TaxaPopulation IDIndividual IDPhenotype ValueCountrySitenameLatitudeLongitude
Helianthus annuusANN_05ANN08484.38895United StatesCalifornia33.69278-116.18411
Helianthus annuusANN_06ANN08514.84805United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08525.0197875United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08535.5660125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08545.554625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08555.493125United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08564.8823United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08574.846925United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08584.88685United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08595.0726625United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_06ANN08604.975175United StatesCalifornia34.24976-117.45148
Helianthus annuusANN_07ANN08615.931675United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08625.559085714United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08636.0825625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08645.93705United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08655.4447375United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08665.471683333United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08675.59105United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08685.2436625United StatesCalifornia38.7892-119.9363
Helianthus annuusANN_07ANN08695.3799875United StatesCalifornia38.7892-119.9363
Publications
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Contact Information
Prof. Dr. Dominik Grimm
Professorship of Bioinformatics

TUM Campus Straubing for Biotechnology and Sustainability (TUMCS)
Weihenstephan-Triesdorf University of Applied Sciences (HSWT)
Petersgasse 18
93415 Straubing
Germany

dominik.grimm [at] hswt.de

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